Tag: review

Once again I look back on a year of blogging. You can see what I’ve been up to on the index page of this blog.

I get the feeling that my blog is just for me and a few students trying to fake having done their set reading. I regularly use my blog to remember how to fix my Ubuntu installation, and to help me remember what I’ve read.

A couple of posts this year broke that pattern.

Of Matlab and Python compared the older, proprietary way of doing scientific computing with Matlab to the rapidly growing, now mature, alternative of the Python ecosystem. I’ve used Matlab for 15 years or so as a scientist. At my new job, which is more open source and software developer oriented, I use Python. My blog post struck a cord with those burnt by licensing issues with Matlab. Basically, with Matlab you pay for a core license and then pay for toolboxes which add functionality (and sometimes you only use a small part of that functionality). It’s even more painful if you are managing networked licenses serving users across the world.

My second blog post with a larger readership was Feminism. This started with the unprofessional attire choice of a scientist on the Rosetta/Philae comet landing mission but turned into a wider, somewhat confessional post on feminism. In a nutshell: women routinely experience abuse and threat of which I believe men are almost entirely oblivious. 

As before my blogging energies have been split between my own blog here, and the ScraperWiki blog. My personal blogging is dominated by book reviews these days as, to be honest, is my blogging at ScraperWiki. I blog about data science books on the ScraperWiki blog  – typically books about software – and anything else on this blog. “Anything else” is usually broadly related to the history of science and technology.

This year has been quite eclectic. I read about the precursors to Darwin and his theory of evolution, macroeconomics, the Bell Laboratories, railways, parenthood, technology in society, finding the longitude (twice), Lord Kelvin, ballooning, Pompeii and I’ve just finished a book on Nevil Maskelyne – Astronomer Royal in the second half of the 18th century. I think my favourite of these was Finding Longitude by Richard Dunn and Rebekah Higgitt not only is the content well written but it is beautifully presented.

Over on the ScraperWiki blog I reviewed a further 12 books, bingeing on graph theory and data mining. My favourites from the "work" set were Matthew A. Russell’s Mining the Social Web and Seven Databases in Seven Weeks. Mining the Social Web because it introduces a bunch of machine learning algorithms around interesting social data, and the examples are supplied as IPython notebooks run in a virtual machine. Seven Databases is different – it gives a whistle stop tour of various types of database but manages to give deep coverage quite quickly.

I continue to read a lot whilst not doing a huge amount of programming – as I observed last year. I did write a large chunk of the API to the EU NewsReader project we’re working on which involved me learning SPARQL – a query language for the semantic web. Obviously to learn SPARQL I read a book, Learning SPARQL, I also had some help from colleagues on the project.

I had a lot of fun visualising the traffic and history of the London Underground, I did a second visualisation post on whether to walk between Underground stations in London.

Back on this blog I did some writing about technology, talking about my favourite text editor (Sublime Text), my experiences with Apple, Ubuntu and Windows operating systems, the dinky Asus T100 Transformer laptop, and replacing my hard drive with an SSD (much easier than I thought it would be). The Asus is sadly unused it just doesn’t serve a useful purpose beside my tablet and ultrabook format laptop. The SSD drive is a revelation, it just makes everything feel quicker.

The telescope has been in the loft for much of the last year but I did a blog post on the Messier objects – nebulae and so forth, and I actually took an acceptable photo of the Orion nebula although this went unblogged.

Finally, the source of the photo at the top of the page, I visited San Sebastian for an EU project I’m working on. I only had my phone so the pictures aren’t that good.

Happy New Year!

My blogging is much reduced this year, at least on my own blog. This is a result of my new job with ScraperWiki and child care, Thomas is now nearly two years old.

I started the year with a couple of posts on my shiny new laptop; working for a startup I’ve escaped from the corporate Dell. One post was on the beast itself – a Sony VAIO, and Windows 8 – Microsoft’s somewhat confusing new operating system offering. The other post was on running Ubuntu on the VAIO. In the past this was a case of setting up dual boot but various innovations make this difficult and there is, in my view, a better solution: a virtual machine.

There wasn’t much ranting this year: I only managed one little one about higher education, and the reluctance amongst lecturers to take any teaching qualifications. The only other marginally opinion piece was on electronic books, where I muttered about DRM limiting the functionality of ebooks.

I managed to read a few books which ended up on my own blog: The Eighth Day of Creation, about the unravelling of the genetic code was a dense, heroic read. The Dinosaur Hunters was light and fluffy. Empire of the Clouds and The Backroom Boys were largely wistful rememberings of Britain’s former greatness in jet aeroplanes and in technology more generally. Chasing Venus and a History of the World in 12 Maps returned to the themes of geodesy and mapping which I’ve explored in the past. Finally, a bit of London history with The Subterranean Railway and Lucy Inglis’ Georgian London. I’ve been following Lucy on twitter since Georgian London was a twinkle in her eye. It’s difficult to choose a favourite amongst these, it’s either History of the World in 12 Maps or Georgian London.

Over on ScraperWiki’s blog I’ve been knocking out blog posts at a great rate, you can see them all here. I did a good deal of book reviewing over there too, my commute into work on the train means I get an hour or so of reading every day – which quickly adds up to a lot of reading! I read about machine learning, data visualisation (this and this), Tableau (this and this), natural language processing, R, Javascript and software engineering. I’m currently ploughing my way through Data Mining: Practical Machine Learning Tools and Techniques. I think my favourite of these was Natural Language Processing with Python. I’m beginning to see the value of the more expensive, better established publishing houses in terms of book quality.

Alongside this I did a few blog posts on new tools for my trade. I’ve long programmed to do scientific analysis but ScraperWiki is a company which sells software, and the discipline of writing software for others to use is different from writing software for yourself, particularly important are testing and source control.

I spoke at a couple of events: Data Science London, and Strata London where I gave an Ignite talk. Ignite talks follow a special format, they are five minutes long and you get 20 slides which advance automatically at the rate of one every 15 seconds – a somewhat frantic experience. My talk is captured on video.

I also did some bits of data analysis; #InspiringWomen was a look at a response to the online bullying and abuse of women. A place in the country was about data on house prices which we had collected for a campaign by Shelter.

Back on my own blog I managed to do a couple of photographic posts, one on Liverpool. The rail loop under Liverpool was closed which meant I had to walk across town to work, and I suddenly realised that Liverpool is rather spectacular architecturally. This led me on to getting the Pevsner Guide to Liverpool. The ScraperWiki office might be a bit unusual in that a quarter of the company owns this book! I also went on a business trip to Trento, which turns out to be a very attractive city, unfortunately I only had my phone with me to take photos.

The last year has highlighted to me what a privilege it was to have so much time to spend on my blogging, photography and garden shed fiddling in the past. It’s what got me my new job but for many, equally able, people this investment of time simply isn’t possible with the other responsibilities they have. Something to consider the next time you’re recruiting, and so highly rating that extra-curricular activity.

Also I realise I have a great deal of theoretical knowledge about a whole pile of technologies but I have spent rather less time on actually doing anything with them, so maybe this coming year there’ll be less reading and more coding on the train.

Happy New Year to you all!

It has become a tradition for me to review my posts at the end of each year, OK I’ve done it twice before and now I find myself sounding like a teenage diarist.

Clearly the main event of this year has been The Arrival; Thomas was born on 4th February, as I write he is systematically throwing all his books on the floor whilst muttering to himself, it is 6am. I haven’t written much about Thomas but he fills my real life, looking after a small child is very much like conducting an experiment at a central facility.

I’ve managed to keep reading although at a somewhat reduced rate. I read about geodesy in “The Great Arc” and “Measure of the Earth”, both tales of considerable derring-do conducted in the jungles of India and Ecuador respectively. I read about scientific instruments, in Stargazers, “Decoding the Heavens”, "A computer called Leo" and "The History of Clocks & Watches". The subjects of the last two of these are obvious, the first is on telescopes and the second on the Antikythera mechanism, an astoundingly complex mechanical model of the heavens. I read about Alan Turing, Christiaan Huygens and Benjamin Franklin.

If I was forced to pick a favourite book I think I would go for Arthur Koestler’s "The Sleepwalkers" which traces the development of cosmology from the ancient Greeks to Isaac Newton with its focus on the journey from Copernicus, still obsessed with celestial circles, to Kepler who started to sound like a modern physicist. Keplers’ attempts to identify elliptic orbits takes on a pantomime air at some points… “They’re right in front of you!”. Or perhaps my favourite should be Stargazers since after reading this I bought a telescope – more of which below.

Slightly more miscellaneously I read Tim Harford’s "Adapt" about trial and error as an approach to public policy and management, "The Geek Manifesto" on science and politics and "The Etymologicon" – a casual journey through where words come from. Finally, I also read "Visualize This", capturing the essence of my data twiddling and cluing me into tidying up my plots using Inkscape (or Adobe Illustrator if you have the cash).

Another new thing this year was a telescope, rather than appear some sort of dedicated follower of fashion, rushing out to buy one in the wake of a celebrity astronomonothon, I delayed until May. This turned out to be a bad idea: it doesn’t get properly dark until two hours after sunset and starts to get light two hours before dawn difficult at the best of times, impossible when combined with childcare responsibilities. Consequently I got little star viewing action for quite some time, except for the Sun. My telescope review post (including video) was my most read post of the year. It has been magical though, my first view of Saturn with its rings had me hopping up and down like a small child! More recently I got Jupiter and the four moons discovered by Galileo. I’m still trying for a deep sky object, I don’t count my pictures of the whole Milky Way taken through a normal camera lens.

Not much else in the way of photography this year, obviously I have an enormous collection of photos of Thomas but I won’t bore you with them but I’ll say to expecting parents who are also keen photographers that a 50mm f/1.4 lens is ideal for photographing small children since you are often indoors operating in relatively low light. I also took some pictures of Chester Cathedral, Beeston Castle and in the area of Harlech, where we took our first holiday with Thomas.

I did a little bit of fiddling with data this year, plotting the spending of the Board of Longitude, finding that they did a great deal to support John Harrison through his life, and looking at how quarterly GDP growth figures are revised – basically they’re all over the place!

I also pottered around a little with science policy and politics. “I am Dr Faustus” was an oft-read post, in which I disagreed with Ananyo Bhattacharya’s assertion that basic research in the UK had been corrupted by the idea of showing some application. “GCSE results through the ages” also got a lot of hits, it showed the changes in grades for GCSE and A levels over the years. 

And as the year came to an end I handed in my notice to go to a new job – starting in March. I used some of my blog posts in support of my application!

At this time it is traditional to review the year just past, I struggle to be timely in my blogging but this is a target big enough to hit (preceded by some holiday, so I have time to do it). As always my efforts are partly for my own amusement but I’m also a desperate observer of my site traffic stats. If you ever feel the need to make someone happy, for very little effort, just randomly click onto a few pages!

I heroically continue on my chosen path as a Liberal Democrat. I made a few posts about the AV referendum, maybe the less said about that the better. I read “The Orange Book”, I found this more entertaining than I thought I would – it’s nice to see policy discussion beyond the length of a newspaper article. The rest of the year I satisfied myself with the odd, not particularly party political, rant. I also made a few posts on the House of Lords, both statistical and political. In this area the thing that affected me most was Terry Pratchett’s programme on assisted dying, which I wrote about here. That, and going on strike (here). The most read of my sort-of-political posts was on the New College of the Humanities, offering degrees for £18,000 per year, which seemed to induce a great rage in academics.

I still find the economy interesting: firstly, I wrote on looking at debt-deficit figures to find economies similar to that of the UK (here) – our neighbours in the phase diagram look distinctly unwell. Secondly, on deficit reduction by growth (here) – it 0.5% on growth per year is worth about £7bn, or a couple of pence on basic rate tax. I also read Niall Ferguson’s “The Ascent of Money” which gives a handy background for our current economic difficulties and also highlights the benefits of a well-functioning economic system.

This year the focus of my reading has been on the history of science, particularly in the late 18th century. This has included books on the Lunar Society, Erasmus Darwin and Edmond Halley. My favourite books of the year were Jean-Pierre Poirier’s biography of Antoine Lavoisier (Lavoisier: Chemist, Biologist, Economist) and Ken Alder’s book: “The Measure of All Things” on the measurement of the meridian from Dunkerque to Barcelona to define the length of the metre at the at the time of the French Revolution. For me science is a route into a more general appreciation of history.

A review of “The Immortal Life of Henrietta Lacks” by Rebecca Skloot is my most read post of the year, it’s about the woman whose cells were used to create the first immortal human cell-line. It’s a fine book, quite unlike any other science related book I have ever read – I suspect the popularity of the post is because it is timely (the book was published a year ago) and I can’t help thinking an awful lot of students have been sent to read it and are looking for a summary. The same goes for “In Defence of History” by R.J. Evans, which is a defence of the study of history against the post-modernists.

I had some fun writing about the French Académie des Sciences and lead mining in the Yorkshire Dales, without the support of a book to review.

A spin-off from my reading about maps, in particular Ken Alder’s book, was a rather obsessional quest to put the locations of all the triangulation points into a Google Map (here). Another enjoyable bit of programmatic fiddling was in playing with the catalogue of objects for the National Museum of Science and Industry (NMSI) which I called “Inordinately fond of bottles…” because it turns out the NMSI is home to a huge number of bottles of all descriptions. And there was also the Javascript timeline of British Wars, it’s always good to know when your scientist protagonists are being distracted by a war.

I still do some photography, on holidays in Hinterglemm, the Yorkshire Dales and the deep South Coast, which is where I grew up; on our expedition down the Sandstone Trail and on a photo tour of Chester, utilising some software for straightening photos of buildings taken with a very wide-angle lens. I also wrote about the Lytro re-focusable camera which takes an array of images meaning the focal plane of an image can be shifted in post-processing (here).

In July I moved my blog from Blogger to self-hosted WordPress. This was driven in part by Mrs SomeBeans for whom I made a website (Blue Poppy Garden Design) – on seeing what I had wrought I wanted one for myself! I made some notes on the process (here). Mrs SomeBeans is still ahead though – she has rather natty business cards.

Leaving the best to last; the most significant thing to happen for me this year is that Mrs SomeBeans is pregnant! The new arrival (codename Beetle) is due on 22nd February. It’s been an odd sort of time, we have prepared for the new arrival by getting a media server, replacing the patio, decorating and attending NCT classes. I haven’t written very much about it, perhaps for fear of a jinx and perhaps because it is very personal. I did do a bit of blogging, the dating scan (here) and the anatomy scan (here), I also got interested in ultrasound scanning (here).

I regret not writing more on current affairs, the earthquake in Japan and the various elements of the Arab Spring have been completely absent from my blog. I have a suspicion my blogging for the coming year will be replaced by nappy changing and other childcare activities.

Happy New Year!